Publications

Incorporating contextual information into KGWAS for interpretable GWAS discovery

Cheng Jiang, ..., Burkhard Hoeckendorf, Heming Yao, and David Richmond

ICLR LMRL Workshop, 2026 Spotlight

arXiv OpenReview Poster Talk

Intelligent histology for tumor neurosurgery

Xinhai Hou*, Akhil Kondepudi*, Cheng Jiang*, ..., and Todd Hollon

Neuro-Oncology Advances, 2026

Paper arXiv

AI-driven label-free Raman spectromics for intraoperative spinal tumor assessment

David Reinecke, ..., Cheng Jiang, ..., and Daniel A. Orringer

npj Digital Medicine, 2026

Paper

Health system learning achieves generalist neuroimaging models

Akhil Kondepudi, ..., Cheng Jiang, ..., and Todd Hollon

Technical report, 2025

arXiv

Learning neuroimaging models from health system-scale data

Yiwei Lyu, Samir Harake, Asadur Chowdury, ..., Cheng Jiang, ..., and Todd Hollon

Nature Biomedical Engineering, 2025

Demo arXiv Paper

Protocol to annotate and automate single cell instance segmentation on stimulated Raman histology using deep learning

Abhishek Bhattacharya*, Eric Landgraf*, Cheng Jiang, ..., and Todd C. Hollon

STAR Protocols, 2025

Website Paper

Validation of a novel artificial intelligence model (SpinePose) to automatically and accurately predict sinopelvic parameters using scoliosis x-rays in an external cohort

Rushikesh Joshi, Edward Harake, Cheng Jiang, ..., Todd C. Hollon, and Paul Park

Neurosurgical Focus, 2025

Paper

Step-Calibrated diffusion for biomedical optical image restoration

Yiwei Lyu, Sung Jik Cha, Cheng Jiang, ..., Christian Freudiger, Honglak Lee, and Todd Hollon

AAAI, 2025

arXiv GitHub Poster

A self-supervised framework for learning whole slide representations

Xinhai Hou ^*, Cheng Jiang^*, ..., Honglak Lee, and Todd C. Hollon

NeurIPS AIM-FM Workshop, 2024

arXiv

Foundation models for fast, label-free detection of glioma infiltration

Akhil Kondepudi, Melike Pekmezci, Xinhai Hou, Katie Scotford, Cheng Jiang, ..., Shawn Hervey-Jumper, and Todd Hollon

Nature, 2024

Paper Interactive Demo GitHub HuggingFace

Fast intraoperative detection of primary central nervous system lymphoma and differentiation from common central nervous system tumors using stimulated Raman histology and deep learning

David Reinecke, ..., Cheng Jiang, ..., and Daniel Orringer

Neuro-Oncology, 2024

Paper

Super-resolution of biomedical volumes with 2D supervision

Cheng Jiang, ..., Honglak Lee, and Todd Hollon

CVPR CVMI Workshop, 2024

Website arXiv Github Poster

Development and validation of an artificial intelligence model to accurately predict spinopelvic parameters

Edward S. Harake, Joseph R. Linzey, Cheng Jiang, ..., Todd Hollon, Paul Park

Journal of Neurosurgery Spine, 2024

Website arXiv Paper

Hierarchical discriminative learning improves visual representations of biomedical microscopy

Cheng Jiang^*, Xinhai Hou^*, ..., Honglak Lee, and Todd C. Hollon

CVPR, 2023 Highlight

Website arXiv Github Video Poster

Artificial-intelligence-based molecular classification of diffuse gliomas using rapid, label-free optical imaging

Todd Hollon, Cheng Jiang, ..., Christian Freudiger, Honglak Lee, and Daniel Orringer

Nature Medicine, 2023

Interactive Demo Paper arXiv Github

OpenSRH: optimizing brain tumor surgery using intraoperative stimulated Raman histology

Cheng Jiang^*, Asadur Chowdury^*, Xinhai Hou^*, ..., Honglak Lee, and Todd C. Hollon

NeurIPS Datasets & Benchmarks, 2022

Website arXiv Github Talk Poster OpenReview

Rapid automated analysis of skull base tumor specimens using intraoperative optical imaging and artificial intelligence

Cheng Jiang, ..., Daniel A. Orringer, Honglak Lee, and Todd Hollon

Neurosurgery, 2022 Cover

Paper arXiv PubMed Talk

Coupled matrix-matrix and coupled tensor-matrix completion methods for predicting drug-target interactions

Maryam Bagherian, Renaid Kim, Cheng Jiang, Maureen A. Sartor, Harm Derksen, and Kayvan Najarian

Briefings in Bioinformatics, 2021

Paper PubMed

Prediction of cardiac arrhythmia using deterministic probabilistic finite-state automata

Zhi Li, Harm Derksen, Jonathan Gryak, Cheng Jiang, ..., and Kayvan Najarian

Biomedical Signal Processing & Control, 2021

Paper

Segmentation and Severity Analysis of Subdural Hematoma for Patients with Traumatic Brain Injuries

Negar Farzaneh, Craig A. Williamson, Cheng Jiang, ..., Kayvan Najarian, and S. M. Reza Soroushmehr

Diagnostics, 2020

Paper PubMed

Midline Shift vs. Mid-Surface Shift: Correlation with Outcome of Traumatic Brain Injuries

Cheng Jiang, ..., Kayvan Najarian, and S.M.Reza Soroushmehr

BIBM, 2019

Paper PubMed Poster

Automated Subdural Hematoma Segmentation for Traumatic Brain Injured (TBI) Patients

Negar Farzaneh, S.M.Reza Soroushmehr, Craig A. Williamson, Cheng Jiang, ..., and Kayvan Najarian

EMBC, 2017

Paper PubMed